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econullnetr: An r package using null models to analyse the structure of ecological networks and identify resource selection
Vaughan, Ian P. Gotelli, Nicholas J. Memmott, Jane Pearson, Caitlin E. Woodward, Guy Symondson, William O.C.
Vaughan, Ian P.
Gotelli, Nicholas J.
Memmott, Jane
Pearson, Caitlin E.
Woodward, Guy
Symondson, William O.C.
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© 2017 The Authors.
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10.1111/2041-210X.12907
Abstract
Network analysis is increasingly widespread in ecology, with frequent questions asking which nodes (typically species) interact with one another and how strong are the interactions. Null models are a way of addressing these questions, helping to distinguish patterns driven by neutral mechanisms or sampling effects (e.g. relative abundance of different taxa, sampling completeness) from deterministic biological mechanisms (e.g. resource selection and avoidance), but few “off the shelf” tools are available. We present econullnetr, an r package combining null modelling and plotting functions for networks, with data-export tools to facilitate its use alongside existing network analysis packages. It models resource choices made by individual consumers, enabling it to capture individual-level heterogeneity and generalising to a wider range of data types and scenarios than models applied directly to network matrices. The outputs can be analysed from the level of individual links to whole networks. We describe the main functions and provide two short examples, along with the results of a benchmarking exercise to provide guidance about the statistical power and error rates. Our hope is that econullnetr provides a basis for more widespread use of null modelling to assist ecological network interpretation.
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2018-03-01
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mGotelli.pdf
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Vaughan IP, Gotelli NJ, Memmott J, Pearson CE, Woodward G, Symondson WO. econullnetr: An r package using null models to analyse the structure of ecological networks and identify resource selection. Methods in Ecology and Evolution. 2018 Mar;9(3):728-33.